This page details the services available for researchers and data-producing facilities. We define services as tools, databases, and support functions (e.g. hosting services) useful in data-driven life science. Use the search function to identify services that may be relevant for you.
Some of the services listed here are hosted by Scilifelab Data Centre. The status and uptime of all such services can be viewed on the Service status page. To check on the status and uptime of a particular service, click on the icon under ‘Support’ for that service.
We have classified the services by ‘Type’ to make it easier to understand what the service is. Each service can be accessed by clicking on the name under the thumbnail image. Where possible, we have provided direct links to support email addresses , support websites , and links to the underlying code , among others.
If you know of a relevant service that should be listed below, but is missing, please get in touch and the team will assess your suggestion ASAP.
We also have a resources section that offers information that could be useful to those working in data-driven life science (e.g. what compute resources are available in Sweden generally).
A collaborative effort to bring artificial intelligence models to the bioimaging community
Type: Database
Maintained by:
AI4Life BioImage Model Zoo team
Data Sharing, Policy Support, and Services for researchers in Swedish medical imaging AI.
Type: Compute resources, Database, Helpdesk
Chanjo is a sequencing coverage assessment tool useful in clinical and other sequencing contexts.
Type: Tool
CheckQC is a program designed to check a set of quality criteria against an Illumina runfolder.
Type: Tool
A meta-analysis resource showing changes in plasma proteins that occur during COVID-19.
Type: Database
Cutadapt finds and removes adapter sequences, primers, poly-A tails and other types of unwanted sequence from your high-throughput sequencing reads.
Type: Tool
Details about how researchers, research groups, and organisations can store their data using SciLifeLab FAIR Storage resources.
Type: Storage resources
GENMOD is a simple to use command line tool for annotating and analysing genomic variations in the VCF file format.
Type: Tool
Details about how researchers, research groups, and organisations can apply for hosting via the SciLifeLab Platform.
Type: Compute resources
A molecular atlas of human prenatal development, describing every cell type in detail and showing their spatial and temporal distributions in three dimensions.
Type: Database, Tool
The Human Protein Atlas aims to map all the human proteins in cells, tissues, and organs using an integration of various omics and imaging technologies
Type: Database, Portal, Tool
Metabolic Atlas is a web platform integrating open-source genome scale metabolic models (GEMs) for easy browsing and analysis.
Type: Database, Portal, Tool
Aggregate results from bioinformatics analyses across many samples into a single report.
Type: Tool
A community effort to collect a curated set of analysis pipelines and modules built using Nextflow.
Type: Tool, Community
nf-core/sarek is a workflow designed to detect variants on whole genome or targeted sequencing data.
Type: Tool
Repository for publishing any kind of research-related data, posters, presentations, and more!
Type: Database, Tool
A tool that aids researchers in creating data management plans (DMPs) using multiple choice questions
Type: Tool
A portal containing information on research data management in Sweden
Type: Portal, Helpdesk
Maintained by:
NBIS, SciLifeLab Data Centre
Platform for sharing machine learning models and data science applications, such as Shiny and Dash apps.
Type: Tool
A collection of resources centred around the subcellular localisation of proteins
Type: Database, Tool, Portal
Facilitates the sharing and promotion of pandemic preparedness and infectious disease data
Type: Portal
A website developed to make genomic datasets more findable and accessible
Type: Database
Maintained by:
SciLifeLab Data Centre
TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample.
Type: Database, Portal, Tool
No services have the given keyword, please try to use another.
A web-based system for handling calls, proposal submission, reviews, decisions, and grant dossiers.
Type: Tool
Details about how researchers, research groups, and organisations can apply for hosting via the SciLifeLab Platform.
Type: Compute resources
A configurable web-based system enabling communication between units and prospective users
Type: Tool
Cloud-based system for the delivery of data from SciLifeLab units to their users
Type: Tool
No services have the given keyword, please try to use another.
