Services

Overview of the tools, datasets, and other resources available via this Platform.

The SciLifeLab Data Platform includes a technical environment for hosting tools and databases that can be deployed or accessed via the web. The hosting resources are managed by the SciLifeLab Data Centre. Individual researchers, research groups, and research organisations are enouraged to learn more and apply for hosting.

Below, you will find information about resources related to hosting and for data-producing facilities that are either hosted or linked via the SciLifeLab Data Platform.

Services for researchers

These services are available free of charge to all life science researchers and communities in Sweden, regardless of SciLifeLab affiliation.

Hosting on the SciLifeLab Data Platform
Details about how researchers, research groups, and organisations can apply for hosting via the Platform.
Type: Compute resources
Maintained by: SciLifeLab Data Centre
Support:
SciLifeLab Data Repository
Repository for publishing any kind of research-related data, posters, presentations, and more!
Type: Database, Tool
Maintained by: SciLifeLab Data Centre
Support:
The Swedish COVID-19 & Pandemic Preparedness Data Portal
A web portal for resources related to pandemic preparedness research in Sweden
Type: Portal
Maintained by: SciLifeLab Data Centre
Support:
SciLifeLab RDM Guidelines
A portal containing information on research data management in Sweden
Type: Portal, Helpdesk
Maintained by: NBIS, SciLifeLab Data Centre
Support:
Metabolic Atlas
Metabolic Atlas is a web platform integrating open-source genome scale metabolic models (GEMs) for easy browsing and analysis.
Type: Database, Portal, Tool
Maintained by: NBIS
Support:
SciLifeLab Serve
Tool allowing to host and share R Shiny and Dash apps, as well as trained machine learning models
Type: Tool
Maintained by: SciLifeLab Data Centre
Support:
Compute resources in Sweden
Information about the compute resources (e.g. for hosting, analysis) available in Sweden, as well as how to apply.
Type: Compute resources
Maintained by: SciLifeLab Data Centre
Support:
Human Protein Atlas
The Human Protein Atlas aims to map all the human proteins in cells, tissues, and organs using an integration of various omics and imaging technologies
Type: Database, Portal, Tool
Maintained by: The Human Protein Atlas
Support:
TissUUmaps
TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample.
Type: Database, Portal, Tool
Maintained by: TissUUmaps
Support:
AIDA Data Hub
Data Sharing, Policy Support, and Services for researchers in Swedish medical imaging AI.
Type: Compute resources, Database, Helpdesk
Maintained by: AIDA Data Hub
Support:
Human Developmental Cell Atlas
A molecular atlas of human prenatal development, describing every cell type in detail and showing their spatial and temporal distributions in three dimensions.
Type: Database, Tool
Support:
SciLifeLab Data Stewardship Wizard
A tool that aids researchers in creating data management plans (DMPs) using multiple choice questions
Type: Tool
Maintained by: NBIS, SciLifeLab Data Centre
Support:
SubCellBarCode
A collection of resources centred around the subcellular localisation of proteins
Type: Database, Tool, Portal
Maintained by: SubCellBarCode Team
Support:
SweFreq
A website developed to make genomic datasets more findable and accessible
Type: Database
Maintained by: SciLifeLab Data Centre

Services for data-producing facilities/units

The services below are available to facilities/units producing life science data in Sweden. In some cases, the services may only be available for SciLifeLab infrastructure units.

Hosting on the SciLifeLab Data Platform
Details about how researchers, research groups, and organisations can apply for hosting via the Platform.
Type: Compute resources
Maintained by: SciLifeLab Data Centre
Support:
Compute resources in Sweden
Information about the compute resources (e.g. for hosting, analysis) available in Sweden, as well as how to apply.
Type: Compute resources
Maintained by: SciLifeLab Data Centre
Support:
SciLifeLab Data Delivery System
Cloud-based system for the delivery of data from SciLifeLab units to their users
Type: Tool
Maintained by: SciLifeLab Data Centre
Support:
Order Portal
A configurable web-based system enabling communication between units and prospective users
Type: Tool
Maintained by: SciLifeLab Data Centre
Support:
Anubis
A web-based system for handling calls, proposal submission, reviews, decisions, and grant dossiers.
Type: Tool
Maintained by: SciLifeLab Data Centre
Support: